Databases
(What have we discovered)
DISCLAIMER: The databases listed here are primarily discovered from our research. They have all been published as supplemental files of our publications. Some publicly available databases are also organized and provided for teaching purposes.
Annotation of the F-box gene superfamily in 111 plant genomes
Hua, Z. (2021). Diverse evolution in 111 plant genomes reveals purifying and dosage balancing selection models for F-box genes. Int J Mol Sci 22, 871.
Annotation of the UPS members in 14 plant genomes
Hua, Z., and Yu, P. (2019). Diversifying evolution of the ubiquitin-26s proteasome system in Brassicaceae and Poaceae. Int J Mol Sci 20, 3226.
Annotation of Skp1 genes in 3 Arabidopsis species
Hua, Z., and Gao, Z. (2019). Adaptive and degenerative evolution of the S-Phase Kinase-Associated Protein 1-Like family in Arabidopsis thaliana. PeerJ 7, e6740.
Annotation of ubiquitin and ubiquitin-like genes in 50 plant genomes
Hua, Z., Doroodian, P., and Vu, W. (2018). Contrasting duplication patterns reflect functional diversities of ubiquitin and ubiquitin-like protein modifiers in plants. Plant J 95, 296-311.
Annotation of F-box genes in 18 plant genomes
Hua, Z., Zou, C., Shiu, S.H., and Vierstra, R.D. (2011). Phylogenetic comparison of F-box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. PLoS One 6, e16219.
Learning R
Annotation of Arabidopsis thaliana
